=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for samtools-1.21.tar.bz2
=> Checksum SHA512 OK for samtools-1.21.tar.bz2
===> Installing dependencies for samtools-1.21
==========================================================================
The following variables will affect the build process of this package,
samtools-1.21.  Their current value is shown below:

        * CURSES_DEFAULT = curses

Based on these variables, the following variables have been set:

        * CURSES_TYPE = curses

You may want to abort the process now with CTRL-C and change the value
of variables in the first group before continuing.  Be sure to run
`/usr/bin/make clean' after the changes.
==========================================================================
=> Tool dependency mktools-[0-9]*: found mktools-20250213
=> Tool dependency automake>=1.9: found automake-1.16.5nb3
=> Tool dependency autoconf>=2.58: found autoconf-2.72
=> Tool dependency bash-[0-9]*: found bash-5.2.37
=> Tool dependency gmake>=3.81: found gmake-4.4.1
=> Tool dependency perl>=5.0: found perl-5.40.2nb1
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Full dependency htslib>=1.21: found htslib-1.21nb5
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Overriding tools for samtools-1.21
===> Extracting for samtools-1.21
===> Patching for samtools-1.21
=> Applying pkgsrc patches for samtools-1.21
=> Verifying /usr/pkgsrc/biology/samtools/patches/patch-Makefile
=> Applying pkgsrc patch /usr/pkgsrc/biology/samtools/patches/patch-Makefile
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-Makefile,v 1.6 2024/10/11 22:38:32 bacon Exp $
|
|# Respect pkgsrc env
|
|--- Makefile.orig	2021-03-19 17:48:34.572594186 +0000
|+++ Makefile
--------------------------
Patching file Makefile using Plan A...
Hunk #1 succeeded at 59 (offset -2 lines).
done
===> Creating toolchain wrappers for samtools-1.21
===> Configuring for samtools-1.21
=> Substituting "bash" in test/test.pl
=> Substituting "version" in configure.ac
cd /usr/pkgsrc/biology/samtools/work/samtools-1.21 && autoreconf -if
configure.ac:64: warning: _AC_CONFIG_SUBDIRS: you should use literals
./lib/autoconf/status.m4:1096: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:64: the top level
=> Modifying GNU configure scripts to avoid --recheck
=> Replacing config-guess with pkgsrc versions
=> Replacing config-sub with pkgsrc versions
=> Replacing install-sh with pkgsrc version
=> Replacing Perl interpreter in misc/*.pl test/*.pl misc/plot-bamstats misc/plot-ampliconstats.
=> Checking for portability problems in extracted files
checking for gawk... /usr/bin/awk
checking for powerpc--netbsd-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for gcc option to enable large file support... none needed
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking for NcursesW wide-character library... no
checking for Ncurses library... no
checking for Curses library... yes
checking for working curses.h... yes
checking for X/Open Enhanced Curses conformance... no
checking for Curses color functions... yes
checking for obsolete Curses functions... yes
checking for library containing cbreak... none required
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h