=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for py313-lmdb-1.5.1 * Building wheel... Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |diff --git a/libraries/liblmdb/lmdb.h b/libraries/liblmdb/lmdb.h |index ff03c22..3d6f4cc 100644 |--- a/libraries/liblmdb/lmdb.h |+++ b/libraries/liblmdb/lmdb.h -------------------------- Patching file lmdb.h using Plan A... Hunk #1 succeeded at 682. Hunk #2 succeeded at 706. Hmm... The next patch looks like a unified diff to me... The text leading up to this was: -------------------------- |diff --git a/libraries/liblmdb/mdb.c b/libraries/liblmdb/mdb.c |index deb6779..b5d152c 100644 |--- a/libraries/liblmdb/mdb.c |+++ b/libraries/liblmdb/mdb.c -------------------------- Patching file mdb.c using Plan A... Hunk #1 succeeded at 9366. Hunk #2 succeeded at 9417. Hunk #3 succeeded at 9481. Hunk #4 succeeded at 9599. Hunk #5 succeeded at 9625. Hunk #6 succeeded at 9642. done py-lmdb: Using bundled liblmdb with py-lmdb patches; override with LMDB_FORCE_SYSTEM=1 or LMDB_PURE=1. py-lmdb: Using CPython extension; override with LMDB_FORCE_CFFI=1. running bdist_wheel running build running build_py creating build/lib.netbsd-9.0-macppc-cpython-313/lmdb copying lmdb/__init__.py -> build/lib.netbsd-9.0-macppc-cpython-313/lmdb copying lmdb/__main__.py -> build/lib.netbsd-9.0-macppc-cpython-313/lmdb copying lmdb/_config.py -> build/lib.netbsd-9.0-macppc-cpython-313/lmdb copying lmdb/cffi.py -> build/lib.netbsd-9.0-macppc-cpython-313/lmdb copying lmdb/tool.py -> build/lib.netbsd-9.0-macppc-cpython-313/lmdb running build_ext building 'cpython' extension creating build/temp.netbsd-9.0-macppc-cpython-313/build/lib creating build/temp.netbsd-9.0-macppc-cpython-313/lmdb gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -fPIC -Ilib/py-lmdb -Ibuild/lib -I/usr/pkg/include/python3.13 -c build/lib/mdb.c -o build/temp.netbsd-9.0-macppc-cpython-313/build/lib/mdb.o -DHAVE_PATCHED_LMDB=1 -UNDEBUG -w gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -fPIC -Ilib/py-lmdb -Ibuild/lib -I/usr/pkg/include/python3.13 -c build/lib/midl.c -o build/temp.netbsd-9.0-macppc-cpython-313/build/lib/midl.o -DHAVE_PATCHED_LMDB=1 -UNDEBUG -w gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -fPIC -Ilib/py-lmdb -Ibuild/lib -I/usr/pkg/include/python3.13 -c lmdb/cpython.c -o build/temp.netbsd-9.0-macppc-cpython-313/lmdb/cpython.o -DHAVE_PATCHED_LMDB=1 -UNDEBUG -w lmdb/cpython.c: In function 'get_fspath': lmdb/cpython.c:429:5: warning: 'Py_FileSystemDefaultEncoding' is deprecated [-Wdeprecated-declarations] return PyUnicode_AsEncodedString(src, Py_FileSystemDefaultEncoding, ^~~~~~ In file included from /usr/pkgsrc/databases/py-lmdb/work/.buildlink/include/python3.13/Python.h:99:0, from lmdb/cpython.c:26: /usr/pkgsrc/databases/py-lmdb/work/.buildlink/include/python3.13/fileobject.h:22:46: note: declared here Py_DEPRECATED(3.12) PyAPI_DATA(const char *) Py_FileSystemDefaultEncoding; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ lmdb/cpython.c: In function 'val_from_buffer': lmdb/cpython.c:548:12: warning: implicit declaration of function 'PyObject_AsReadBuffer'; did you mean 'PyObject_GetBuffer'? [-Wimplicit-function-declaration] return PyObject_AsReadBuffer(buf, ^~~~~~~~~~~~~~~~~~~~~ PyObject_GetBuffer lmdb/cpython.c: In function 'parse_args': lmdb/cpython.c:721:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(i = 0; i < size; i++) { ^ lmdb/cpython.c: In function 'env_copy': lmdb/cpython.c:1369:18: warning: implicit declaration of function 'mdb_env_copy3'; did you mean 'mdb_env_copy2'? [-Wimplicit-function-declaration] UNLOCKED(rc, mdb_env_copy3(self->env, fspath_s, flags, txn)); ^ lmdb/cpython.c:559:12: note: in definition of macro 'UNLOCKED' out = (e); \ ^ lmdb/cpython.c: In function 'env_copyfd': lmdb/cpython.c:1452:18: warning: implicit declaration of function 'mdb_env_copyfd3'; did you mean 'mdb_env_copyfd2'? [-Wimplicit-function-declaration] UNLOCKED(rc, mdb_env_copyfd3(self->env, HANDLE_ARG, flags, txn)); ^ lmdb/cpython.c:559:12: note: in definition of macro 'UNLOCKED' out = (e); \ ^ gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -latomic -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -latomic -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -O2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 build/temp.netbsd-9.0-macppc-cpython-313/build/lib/mdb.o build/temp.netbsd-9.0-macppc-cpython-313/build/lib/midl.o build/temp.netbsd-9.0-macppc-cpython-313/lmdb/cpython.o -L/usr/pkg/lib -o build/lib.netbsd-9.0-macppc-cpython-313/lmdb/cpython.so ld: cannot find -latomic ld: cannot find -latomic error: command '/usr/pkgsrc/databases/py-lmdb/work/.cwrapper/bin/gcc' failed with exit code 1 Exception ignored in: Traceback (most recent call last): File "/usr/pkg/lib/python3.13/threading.py", line 1383, in __del__ TypeError: 'NoneType' object does not support the context manager protocol ERROR Backend subprocess exited when trying to invoke build_wheel *** Error code 1 Stop. make[1]: stopped in /usr/pkgsrc/databases/py-lmdb *** Error code 1 Stop. make: stopped in /usr/pkgsrc/databases/py-lmdb