=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for minimap2-2.28.tar.gz
=> Checksum SHA512 OK for minimap2-2.28.tar.gz
===> Installing dependencies for minimap2-2.28nb1
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency gmake>=3.81: found gmake-4.4.1
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Build dependency simde>=0.7.2: found simde-0.8.2
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Overriding tools for minimap2-2.28nb1
===> Extracting for minimap2-2.28nb1
===> Patching for minimap2-2.28nb1
=> Applying pkgsrc patches for minimap2-2.28nb1
=> Verifying /usr/pkgsrc/biology/minimap2/patches/patch-Makefile.simde
=> Applying pkgsrc patch /usr/pkgsrc/biology/minimap2/patches/patch-Makefile.simde
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-Makefile.simde,v 1.3 2024/05/18 00:27:16 nia Exp $
|
|# Respect standard env vars
|
|--- Makefile.simde.orig	2024-03-27 14:57:17.000000000 +0000
|+++ Makefile.simde
--------------------------
Patching file Makefile.simde using Plan A...
Hunk #1 succeeded at 1.
Hunk #2 succeeded at 39.
Hunk #3 succeeded at 50.
Hunk #4 succeeded at 75.
done
=> Verifying /usr/pkgsrc/biology/minimap2/patches/patch-example.c
=> Applying pkgsrc patch /usr/pkgsrc/biology/minimap2/patches/patch-example.c
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-example.c,v 1.2 2024/04/10 12:36:12 bacon Exp $
|
|# Fix data type mismatch
|
|--- example.c.orig	2021-11-30 15:26:24 UTC
|+++ example.c
--------------------------
Patching file example.c using Plan A...
Hunk #1 succeeded at 44.
done
===> Creating toolchain wrappers for minimap2-2.28nb1
===> Configuring for minimap2-2.28nb1
=> Checking for portability problems in extracted files